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Abstract During their nonbreeding period, many species of swallows and martins (family: Hirundinidae) congregate in large communal roosts. Some of these roosts are well-known within local birdwatching communities; however, monitoring them at large spatial scales and with day-to-day temporal resolution is challenging. Community-science platforms such as the Purple Martin Conservation Association’s project MartinRoost and eBird have addressed some of these challenges by centralizing data collected from regional communities. Additionally, due to the high densities of birds within these aggregations, their early morning dispersals are systematically detected by weather radars, which have also been used to collect data about roost timing and location. An important issue, however, limits spatiotemporal scope of previous radar-based studies: finding the roost signatures on millions of rendered reflectivity images is extremely time-consuming. Recent advances in computer vision, however, have allowed us to reduce this effort. The rise of this technology makes it necessary that we assess whether our biological definition of a roost matches what the machine-learning models are capturing. We do so by comparing eBird detections of roosts in the Great Lakes region with those obtained by a human-supervised machine-learning model from 2000 to 2022. With more than two decades of data, we assess the ability of these two tools to detect roosts on a day-to-day basis, and we compare the phenology of dispersals to investigate whether radar detections correspond to swallow and martin roosts or if they are associated with other well-known birds that form large aggregations. Our comparison of these datasets strongly suggests that swallows and martins are responsible for the dispersals we observe on the radars from July to late September; however, the alternative species we examined could be causing some of the detections in October. 

Abstract Long‐term monitoring of bird populations across scales is important in evaluating conservation targets and creating effective conservation strategies. For nearly six decades, the Breeding Bird Survey (BBS) has served as the primary broad‐scaled source of relative abundance trends of swallows and martins in North America. Recently, however, it has become possible to obtain breeding population trends using semi‐structured eBird community science data. Moreover, weather surveillance radar data of swallow and martin roosting populations yield a third complementary source of trend information.Using results from these three approaches, we propose a novel method of spatially combining estimates of percent change per year into a probability of directional agreement and/or disagreement that describes (1) the direction of the trend within a given region, (2) the amount of evidence associated with the estimate and (3) how much uncertainty surrounds it. We focus our efforts on an area of high Hirundinidae concentration in the North American Great Lakes region and predict trends from 2012 to 2022.We found a high probability of agreement between all three sources about observed declines in swallow and martin trends in the region surrounding Lake Ontario and to the west of Lake Michigan. Focusing future research on these regions could improve our understanding of these declines and help build more targeted conservation initiatives.Synthesis and applications. Our data integration methodology allows managers to identify regions that accumulate evidence of concerning trends across multiple wildlife monitoring schemes. These regions can thus be prioritized in conservation and management efforts. This approach can be generalized to other sources of long‐term monitoring data of different species, at different stages of their annual cycle, in any geographic location. 

More than two billion birds migrate through the Gulf of Mexico each spring en route to breeding grounds in the USA and Canada. This region has a long history of complex natural and anthropogenic environments as the northern Gulf coast provides the first possible stopover habitats for migrants making nonstop trans‐Gulf crossings during spring migration. However, intense anthropogenic activity in the region, which is expanding rapidly at present, makes migrants vulnerable to a multitude of obstacles and increasingly fragments and alters these habitats. Understanding the timing of migrants' overwater arrivals has biological value for expanding our understanding of migration ecology relative to decision‐making for nonstop flights, and is imperative for advancing conservation of this critical region through the identification of key times in which to direct conservation actions (e.g. temporary halting of wind turbines, reduction of light pollution). We explored 10 years of weather surveillance radar data from five sites along the northern Gulf of Mexico coast to quantify the daily timing and intensity of arriving trans‐Gulf migrants. On a daily scale, we found that migrant intensity peaked an average of nine hours after local sunrise, occurring earliest at easternmost sites. On a seasonal level, the greatest number of arrivals occurred between late April and early May, with peak intensity occurring latest at westernmost sites. Overall intensity of migration across all 10 years of data was greatest at the westernmost sites and decreased moving farther to the east. These findings emphasize the differential spatial and temporal patterns of use of the Gulf of Mexico region by migrating birds, information that is essential for improving our understanding of the ecology of trans‐Gulf migration and for supporting data‐driven approaches to conservation actions for the migratory birds passing through this critical region. 

Abstract Earth's lower atmosphere is a vital ecological habitat, home to trillions of organisms that live, forage, and migrate through this medium. Despite its importance, this space is seldom considered a primary habitat for ecological or conservation prioritization, making it one of the least studied environments. However, it plays a crucial role as a global conduit for the transfer of biomass, weather, and inorganic materials. Fundamental research is essential to address core ecological questions related to the ecological consequences of this habitat's intricate spatial and temporal structure. To advance our understanding of airspace use by migratory animals, we analyzed over 108 million 5‐min radar observations from 143 NEXRAD sites, focusing on 24‐h diel cycles across the contiguous United States. This extensive dataset, spanning from 1995 to 2022, allowed us to quantify aerial space use by systematically identifying peak activity times, the portion of the airspace that contained the majority of migration activity, and the percentage of migrants passing across diurnal and nocturnal diel cycles. We found that airspace is used predominantly during nocturnal periods in both spring and autumn (88%), while summer exhibited a more balanced distribution (54% nocturnal). Additionally, the percentage of nocturnal activity increased with latitude in spring and autumn but decreased in summer. Peak aerial activity typically occurred about 4 h after local sunset in both spring and autumn, with variations based on latitude and longitude. During these peak times, on average, half of the aerial movement was confined within a vertical band of 516 meters, starting around 355 m above ground level. Our research underscores the need to view the lower atmosphere as a structured habitat with significant ecological importance. 

Abstract Type 1 polyketides are a major class of natural products used as antiviral, antibiotic, antifungal, antiparasitic, immunosuppressive, and antitumor drugs. Analysis of public microbial genomes leads to the discovery of over sixty thousand type 1 polyketide gene clusters. However, the molecular products of only about a hundred of these clusters are characterized, leaving most metabolites unknown. Characterizing polyketides relies on bioactivity-guided purification, which is expensive and time-consuming. To address this, we present Seq2PKS, a machine learning algorithm that predicts chemical structures derived from Type 1 polyketide synthases. Seq2PKS predicts numerous putative structures for each gene cluster to enhance accuracy. The correct structure is identified using a variable mass spectral database search. Benchmarks show that Seq2PKS outperforms existing methods. Applying Seq2PKS to Actinobacteria datasets, we discover biosynthetic gene clusters for monazomycin, oasomycin A, and 2-aminobenzamide-actiphenol. 

Sustained attention (SA) and working memory (WM) are critical processes, but the brain networks supporting these abilities in development are unknown. We characterized the functional brain architecture of SA and WM in 9- to 11-year-old children and adults. First, we found that adult network predictors of SA generalized to predict individual differences and fluctuations in SA in youth. A WM model predicted WM performance both across and within children—and captured individual differences in later recognition memory—but underperformed in youth relative to adults. We next characterized functional connections differentially related to SA and WM in youth compared to adults. Results revealed 2 network configurations: a dominant architecture predicting performance in both age groups and a secondary architecture, more prominent for WM than SA, predicting performance in each age group differently. Thus, functional connectivity (FC) predicts SA and WM in youth, with networks predicting WM performance differing more between youths and adults than those predicting SA. 

Abstract The exodus of flying animals from their roosting locations is often visible as expanding ring‐shaped patterns in weather radar data. The NEXRAD network, for example, archives more than 25 years of data across 143 contiguous US radar stations, providing opportunities to study roosting locations and times and the ecosystems of birds and bats. However, access to this information is limited by the cost of manually annotating millions of radar scans. We develop and deploy an AI‐assisted system to annotate roosts in radar data. We build datasets with roost annotations to support the training and evaluation of automated detection models. Roosts are detected, tracked, and incorporated into our developed web‐based interface for human screening to produce research‐grade annotations. We deploy the system to collect swallow and martin roost information from 12 radar stations around the Great Lakes spanning 21 years. After verifying the practical value of the system, we propose to improve the detector by incorporating both spatial and temporal channels from volumetric radar scans. The deployment on Great Lakes radar scans allows accelerated annotation of 15 628 roost signatures in 612 786 radar scans with 183.6 human screening hours, or 1.08 s per radar scan. We estimate that the deployed system reduces human annotation time by ~7×. The temporal detector model improves the average precision at intersection‐over‐union threshold 0.5 (AP^{IoU = .50}) by 8% over the previous model (48%→56%), further reducing human screening time by 2.3× in its pilot deployment. These data contain critical information about phenology and population trends of swallows and martins, aerial insectivore species experiencing acute declines, and have enabled novel research. We present error analyses, lay the groundwork for continent‐scale historical investigation about these species, and provide a starting point for automating the detection of other family‐specific phenomena in radar data, such as bat roosts and mayfly hatches. 

Abstract In this study, we combined a machine learning pipeline and human supervision to identify and label swallow and martin roost locations on data captured from 2000 to 2020 by 12 Weather Surveillance Radars in the Great Lakes region of the US. We employed radar theory to extract the number of birds in each roost detected by our technique. With these data, we set out to investigate whether roosts formed consistently in the same geographic area over two decades and whether consistency was also predictive of roost size. We used a clustering algorithm to group individual roost locations into 104 high‐density regions and extracted the number of years when each of these regions was used by birds to roost. In addition, we calculated the overall population size and analyzed the daily roost size distributions. Our results support the hypothesis that more persistent roosts are also gathering more birds, but we found that on average, most individuals congregate in roosts of smaller size. Given the concentrations and consistency of roosting of swallows and martins in specific areas throughout the Great Lakes, future changes in these patterns should be monitored because they may have important ecosystem and conservation implications.